PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00064.1_g00028.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 208aa    MW: 24113.3 Da    PI: 7.8785
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00064.1_g00028.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.51.1e-2251293128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              +G+rFhPtd el+ + Lk+  +g+  +++ + i+ +di+    Pw++    ++eek  yf +  +k++++ +r  r+ ++g+Wka+
  Sme2.5_00064.1_g00028.1   5 MGVRFHPTDTELI-NLLKRCFKGEIfFHEGSLIHIADIHGDqPPWEIF-GSDSEEKVRYFITLLKKRKSEYTRFARTCAKGTWKAQ 88 
                              7************.8899999999854444569999**976368***6.566777788**************************99 PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +++++++ +g +vg k++++f   +++ g++ +W+m+ey++
  Sme2.5_00064.1_g00028.1  89 TGENSIKNNhNGIVVGFKRSFTFV--TKEPGQNKTWLMKEYSV 129
                              99999998868889*********9..566678999******86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.8253153IPR003441NAC domain
SuperFamilySSF1019413.14E-254153IPR003441NAC domain
PfamPF023651.1E-145129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSTSMGVRFH PTDTELINLL KRCFKGEIFF HEGSLIHIAD IHGDQPPWEI FGSDSEEKVR  60
YFITLLKKRK SEYTRFARTC AKGTWKAQTG ENSIKNNHNG IVVGFKRSFT FVTKEPGQNK  120
TWLMKEYSVA HDFFRENNHI PKENFVICRI KKKTNKEKVN AVEIQDCDVA GIINHMLFTP  180
NHNNYSTKED QDEWDSIIDT VCDTNCSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348012.17e-86PREDICTED: NAC domain-containing protein 83-like
TrEMBLM1E0Z43e-85M1E0Z4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000975965e-86(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.15e-16NAC family protein