PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00064.1_g00023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 289aa    MW: 33290.8 Da    PI: 6.5215
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00064.1_g00023.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.16.2e-1841283127
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                               G+rF Pt+ el+ + Lk+ ++gk +++   ik v+iy    Pw +    +aeek  yf ++++k++ ++ r+ r+ ++g+W+ + 
  Sme2.5_00064.1_g00023.1   4 LGVRFYPTEVELI-NILKRFLKGKLFQC--PIKLVEIYGDqPPWAFF---TAEEKVDYFITPTRKQKGSEGRHYRTCANGTWRGQT 83 
                              69***********.88*********988..79*****9872679994...4566777***************************** PP

                      NAM  88 kdkevlskkgelvglkktLvfy....kgrapkge.ktdWvmheyr 127
                              + k+++++kg++vg ++   +     ++++++g+   +W+m ey 
  Sme2.5_00064.1_g00023.1  84 SAKPIKNHKGSVVGFRRNYKYQchskEEKKNNGKdAINWLMREYF 128
                              *********************9887644555555267*******6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.4872152IPR003441NAC domain
SuperFamilySSF1019415.36E-214150IPR003441NAC domain
PfamPF023651.4E-125127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSILGVRFYP TEVELINILK RFLKGKLFQC PIKLVEIYGD QPPWAFFTAE EKVDYFITPT  60
RKQKGSEGRH YRTCANGTWR GQTSAKPIKN HKGSVVGFRR NYKYQCHSKE EKKNNGKDAI  120
NWLMREYFVG DDFFTENNIP KQDFTVCRIK KYIKQKKDND KAIVDDMEED VVKGIIEGML  180
HGPDACATTF MNGEYDLRGY NQINDQVLRN STMVKQNTTG ESSTLKEDCQ IQQVQGNVAN  240
EIIGSSDFWE MINGILKYVT VNIPDDPLQV DDQPALELLV NENIFNPFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563528.12e-84PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A2G2Y6U63e-83A0A2G2Y6U6_CAPAN; Uncharacterized protein
STRINGXP_009617292.14e-70(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.47e-11NAC domain containing protein 82