PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00036.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 419aa    MW: 46240.9 Da    PI: 7.65
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00036.1_g00016.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.34.3e-16202248455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  Sme2.5_00036.1_g00016.1 202 VHNQSERRRRDRINQRMKALQRLVPNA-----NKTDKASMLDEVIDYLKQLQ 248
                              6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-19195266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-19196267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.835198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-13202248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-9203252No hitNo description
SMARTSM003534.2E-17204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MLNFIEKFRS SKCEEVAELT WEKGQLGMHG LGGILSISQA KQTLGRTGDT LESIVHQATC  60
HGKNQTSIHQ NYDQNDDQDL KIEELCSGGK WGESSQQMAP PRATLLAKKR MRPSESDPQY  120
GRAEDHEHTE RSACASASTT FCKENDTTMV TWPSFDESSR SIKSKTTCDE DSACHGGGSE  180
NKEEEHETRR SNSSRRSRAA AVHNQSERRR RDRINQRMKA LQRLVPNANK TDKASMLDEV  240
IDYLKQLQAQ VQLMSSTSRN IAPQMMMPLG MHQHIQMSLL ARMGVGVGLG MGMGMFDMTA  300
LARAVAAAST TTSHQSLPTH PLIHPNQMTA PTNNIPFIPP GAFALQPAAP SIIPSDTQAN  360
TVARANAVTP DAYKAFLPQS MDMEYLNNMA ALYRQQLANQ SAQITGSKLN QGDQTDHRN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563315.10.0PREDICTED: transcription factor UNE10 isoform X1
TrEMBLA0A1U8FWY30.0A0A1U8FWY3_CAPAN; transcription factor UNE10 isoform X1
STRINGSolyc03g115540.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61270.14e-31phytochrome-interacting factor7