PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00029.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 389aa    MW: 42769.5 Da    PI: 4.8099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00029.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83e-16147194355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              + hn  E+rRR+riN+++  L++l+P+a      K +Ka++L +A+eY+k+Lq
  Sme2.5_00029.1_g00003.1 147 QVHNLSEKRRRSRINEKMKALQKLIPNA-----NKTDKASMLDEAIEYLKQLQ 194
                              57*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.37E-17140198No hitNo description
Gene3DG3DSA:4.10.280.101.8E-19141204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-20141205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.828144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13147194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MANNNVYHHN ANNDHSFSLT DPDSEPDDIS VFLRHILLPS SSSSSSNFMG NEMQYSSPLP  60
HLMPKNQHGD LSSMVNSSAG GILLSSSGAY VVPASATNVS SSSVGTMDND PDEYECESED  120
GTEDLGAEAS VQPPPSRNTS KRSRAAQVHN LSEKRRRSRI NEKMKALQKL IPNANKTDKA  180
SMLDEAIEYL KQLQLQVQML TMRNGLNTYP LGLPRVLQQN ELPQQKMGLC EGNGFTNAKV  240
AGNLQVNQDT LLNAILNPAE NCTETKLTPV TTISNTNHSD NAFEPESSMN IHLDPFQLSR  300
STSKEIWMED CLHLYGMNEQ TTKTASIGAN VAFSVPFDTD ASSLKRNSWE ACLLRCQFGT  360
VNETYLDTDQ LLSPQLYSHV GSSTYVDII
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153731e-100AC215373.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0064B17, complete sequence.
GenBankAC2154801e-100AC215480.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0055O24, complete sequence.
GenBankHG9755141e-100HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065177.10.0transcription factor SPATULA isoform X1
TrEMBLA0A2G3D5990.0A0A2G3D599_CAPCH; Transcription factor ALC
STRINGSolyc02g093280.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-41bHLH family protein