PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00019.1_g00019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 464aa    MW: 51181.8 Da    PI: 9.4071
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00019.1_g00019.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-15145194155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++grW+++I+d      + k+++lg f+ a  Aa+a+++a+ k++g
  Sme2.5_00019.1_g00019.1 145 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDDAHIAARAYDRAAIKFRG 194
                              78*******************......55************************997 PP

2AP239.41.6e-12237285153
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                              s+++GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k 
  Sme2.5_00019.1_g00019.1 237 SKFRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKT 285
                              79********.7******5553..2.26**********99**********886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-6145194IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-15145203IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.7E-16146203IPR001471AP2/ERF domain
PROSITE profilePS5103217.016146202IPR001471AP2/ERF domain
SMARTSM003802.2E-30146208IPR001471AP2/ERF domain
CDDcd000185.27E-22146201No hitNo description
CDDcd000182.06E-23237297No hitNo description
PfamPF008471.2E-7237284IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-16237296IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-15238295IPR001471AP2/ERF domain
PROSITE profilePS5103214.934238295IPR001471AP2/ERF domain
SMARTSM003803.6E-29238301IPR001471AP2/ERF domain
PRINTSPR003672.2E-5239250IPR001471AP2/ERF domain
PRINTSPR003672.2E-5277297IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MMLDLNVSVI YNNLPEGSVA NGSGTSSSSL RNAETTTSAG DGDSCSTRSG DLFAFNFGIL  60
KVGGAETSRS SNNDDENRRV THSQFVTRQL FPVDDAELNR KQTDRVFLSS GTSGYVGFGD  120
VRIVQPQPPK QQVKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDDAHI  180
AARAYDRAAI KFRGVDADIN FSLSDYEEDM KQMKNLGKEE FVHLLRRHST GFSRGSSKFR  240
GVTLHKCGRW EARMGQFLGK KYIYLGLFDS EVEAARAYDK AAIKTSGKEA VTNFEPSAYE  300
GNTMSEPQNE GSQHDLDLNL GISTSSSKEF DRLGSSRYHP YDIEASRKPK MDKFGPVMVG  360
SSHLKGLPMM SQQAQLWTGI DSSFSSSYEG RTYDKGKNIG SSRGPSNWTL QTPSQVDTTI  420
PLTAFCKAAS SGFFIPPTAS ITSSASATNA SQCFYQINPR LTPS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5869540.0HQ586954.1 Solanum lycopersicum AP2 transcription factor SlAP2e mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577819.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
TrEMBLF6KQN50.0F6KQN5_SOLLC; AP2 transcription factor SlAP2e
STRINGSolyc06g075510.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-101related to AP2.7