PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00014.1_g00032.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 256aa    MW: 30009.8 Da    PI: 6.7907
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00014.1_g00032.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1614.5e-50101401129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                              lppGfrF P+deel+++yL +k+++++ l l +  ++e+d++++ePw+Lp+ +k +++ewyfFs rd+kyatg r+nrat sgyWk
  Sme2.5_00014.1_g00032.1  10 LPPGFRFCPSDEELICHYLYNKIANEEgLVL-NYsLAEIDLHTCEPWQLPEVAKLNSTEWYFFSFRDRKYATGFRANRATISGYWK 94 
                              79**********************9995555.545***************88888999**************************** PP

                      NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                              atgkd++vl+  +++ vg++ktLvfyk+rap+g kt+W+mhe+rle
  Sme2.5_00014.1_g00032.1  95 ATGKDRTVLDPkTRNIVGMRKTLVFYKNRAPNGLKTNWIMHEFRLE 140
                              *********9856677***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-598158IPR003441NAC domain
PROSITE profilePS5100556.77610158IPR003441NAC domain
PfamPF023653.6E-2711139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDLREIGATL PPGFRFCPSD EELICHYLYN KIANEEGLVL NYSLAEIDLH TCEPWQLPEV  60
AKLNSTEWYF FSFRDRKYAT GFRANRATIS GYWKATGKDR TVLDPKTRNI VGMRKTLVFY  120
KNRAPNGLKT NWIMHEFRLE NPHMPLKEDW VLCRVYYKDK GENNNNNSTN KLSSQNKYEA  180
IIASSNLSQS PPRMNQNSLH CDISYQSQPH QIIQSSNTIH HHLFDLLVKD HHETTQLLDM  240
DFEESFLQDE GMHFYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-46915816165NO APICAL MERISTEM PROTEIN
1ut4_B1e-46915816165NO APICAL MERISTEM PROTEIN
1ut7_A1e-46915816165NO APICAL MERISTEM PROTEIN
1ut7_B1e-46915816165NO APICAL MERISTEM PROTEIN
3swm_A1e-46915819168NAC domain-containing protein 19
3swm_B1e-46915819168NAC domain-containing protein 19
3swm_C1e-46915819168NAC domain-containing protein 19
3swm_D1e-46915819168NAC domain-containing protein 19
3swp_A1e-46915819168NAC domain-containing protein 19
3swp_B1e-46915819168NAC domain-containing protein 19
3swp_C1e-46915819168NAC domain-containing protein 19
3swp_D1e-46915819168NAC domain-containing protein 19
4dul_A1e-46915816165NAC domain-containing protein 19
4dul_B1e-46915816165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754452e-90HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166501.11e-160PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLM1BSG21e-159M1BSG2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000519151e-159(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.14e-87NAC domain containing protein 74