PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00013.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 217aa    MW: 24352.1 Da    PI: 7.4043
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00013.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.21.5e-372585363
                   zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                             ++ ++cprC+stntkfCyynnys sqPr+fCk+CrryWt GG+lrn+P+Gg +rk+kksss
  Sme2.5_00013.1_g00005.1 25 QALKNCPRCNSTNTKFCYYNNYSFSQPRFFCKNCRRYWTDGGSLRNIPIGGVSRKSKKSSS 85
                             55679****************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-221175IPR003851Zinc finger, Dof-type
PfamPF027012.2E-322782IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.6522882IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103066IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEEIIVPKNT RKIRPYHHHQ QQKDQALKNC PRCNSTNTKF CYYNNYSFSQ PRFFCKNCRR  60
YWTDGGSLRN IPIGGVSRKS KKSSSNIMKN NITSPKVQDI IPPHDDKGVV DQDINLDFSS  120
DFKIICELIQ VPNDSFMPIM PNNLVSSTLD HGLIGSSSTS GGYECNNIVQ DLQEATTTTS  180
GGSLFPFEDL KQVSNTSEQN RDGESSSEYC NAILGGH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755201e-133HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244646.11e-104PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBLM1A4Z82e-98M1A4Z8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000148435e-98(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.32e-32Dof family protein