PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00010.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 226aa    MW: 25823.7 Da    PI: 7.0355
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00010.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-1895144356
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                              ++GVr+++ +g+W+AeIrdp     +  +r +lg+f tae+Aa+a+++ + +++ge
  Sme2.5_00010.1_g00008.1  95 FRGVRQRP-WGKWAAEIRDP-----HkaQRLWLGTFVTAEDAARAYDKKAIEFRGE 144
                              8*******.**********7.....337*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-3194152IPR001471AP2/ERF domain
PROSITE profilePS5103223.32794151IPR001471AP2/ERF domain
SMARTSM003802.4E-3694157IPR001471AP2/ERF domain
PRINTSPR003671.2E-1095106IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2295153IPR016177DNA-binding domain
PfamPF008473.2E-1195144IPR001471AP2/ERF domain
CDDcd000185.56E-3195153No hitNo description
PRINTSPR003671.2E-10117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNGLYQDNKC THKLTHEEEF RYMVSALRHV VSGATADGRA DGEASHLLRE IQNAATSDHN  60
SMPRRNTNHN VGNSLHVEME NGKKKRRRRN TKKEFRGVRQ RPWGKWAAEI RDPHKAQRLW  120
LGTFVTAEDA ARAYDKKAIE FRGEKAKTNF PISEYAVNDE VNNSPMVVRE EHEKDQIVMN  180
GDEVAMAIDN TNNNGESSMD NGDDFWATLK EDGLVKLITQ NMPFDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2193152464ATERF1
3gcc_A3e-2193152464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287KKKRRR
28288KKKRRRR
38388KKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065485.12e-92ethylene-responsive transcription factor ERF095-like
TrEMBLA0A2G3A6X83e-91A0A2G3A6X8_CAPAN; Ethylene-responsive transcription factor
STRINGSolyc02g090770.1.14e-89(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.12e-27ERF family protein