PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00010.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 212aa    MW: 24063 Da    PI: 9.3483
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00010.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.7e-1880129356
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                              ++GVr+++ +g+W+AeIrdp     +  +r++lg+f ta++Aa+a+++ + +++ge
  Sme2.5_00010.1_g00006.1  80 FRGVRQRP-WGKWAAEIRDP-----HraQRVWLGTFLTAQDAARAYDKKAIEFRGE 129
                              8*******.**********7.....338*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-3179137IPR001471AP2/ERF domain
SMARTSM003805.9E-3479142IPR001471AP2/ERF domain
PROSITE profilePS5103222.98579136IPR001471AP2/ERF domain
PRINTSPR003672.1E-108091IPR001471AP2/ERF domain
CDDcd000182.91E-2980138No hitNo description
SuperFamilySSF541713.99E-2180138IPR016177DNA-binding domain
PfamPF008477.9E-1180129IPR001471AP2/ERF domain
PRINTSPR003672.1E-10102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MYTLAHKLTQ NQELHYMVSA LRHVVSGAGD GLANDEAAHL LWEVQNASGG SANSMPRRSI  60
NVELQNGKKK RRRRNTKKEF RGVRQRPWGK WAAEIRDPHR AQRVWLGTFL TAQDAARAYD  120
KKAIEFRGEK AKTNFPISQY TAVTDSPPIV VMDEKKESVQ VLNGGDVAVN GENKNSIMQN  180
GDDDDFWDTL EDDGLVKWLM TKDMFFSSFD FS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2078137464ATERF1
3gcc_A1e-2078137464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772KKKRRR
26773KKKRRRR
36873KKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562221.12e-96PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A2G3D8S03e-95A0A2G3D8S0_CAPCH; Ethylene-responsive transcription factor
STRINGPGSC0003DMT4000102975e-95(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.17e-27ERF domain protein 11