PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00008.1_g00032.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 528aa    MW: 57511.1 Da    PI: 5.2509
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00008.1_g00032.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.9e-11340382754
                              HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                              ++ErrRR+++N+++  Lr+++P  +      K++ a+iL  A+eY+k+L
  Sme2.5_00008.1_g00032.1 340 MAERRRRKKLNDRLYMLRSVVPRiS------KMDRASILGDAIEYLKEL 382
                              79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16336400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8339382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-16340396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.58E-13340386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MLSRVNNTVW DVEGKQGGGG EGEETFTNKE NNTDGGVENK EDMELDVDWY MNSNNNMQNH  60
TESICFTQNF TELAENSLFL QTVPVDSSSS CSPSSVSVFN NLDPSQVHYF LTQKAINNNP  120
LDYGFNLGCE NGFLEAQGMG GLNKGGFLLT GGGFHDFSSQ NQMGNPNLNS FTQYPSSHLP  180
QISSAGFSPL GFADGSANEN PLLLNRSKLL KPLDNFASIG AQPTLFQKRA ALRKNLANNG  240
GGSLGDFGGE IGQSSINGEG YDKKKGEGER KRKWVNVEEL DDLSFDGCTL SYDSDDLTEN  300
VTNKVDDSVK NGGNSSNATS TVTGGNQKGK KKGLPAKNLM AERRRRKKLN DRLYMLRSVV  360
PRISKMDRAS ILGDAIEYLK ELLQKINDLH NELESTPPSS SLTQTTSFYP LTPTGPALPV  420
RIKEELYPSS FASPLSSPTG QPARVEVRAR DGRAVNIHMF CSRKPGLLLS TMKALDNLGL  480
DIQQAVISCF NGFALDIFRA EQCKEGQDFH PDQIKAVLLD SAGCHGVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329347KKKGLPAKNLMAERRRRKK
2341348ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6251390.0JX625139.1 Solanum lycopersicum inducer of CBF expression 1 (ICE1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365416.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-121ICE1_ARATH; Transcription factor ICE1
TrEMBLM1CT370.0M1CT37_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000740750.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27032452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-104bHLH family protein