PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00008.1_g00028.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 258aa    MW: 29391 Da    PI: 8.4159
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00008.1_g00028.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-1992141255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr ++ +g+W+AeIrdp   + + +r++lg+f tae+Aa a+++a++k++g
  Sme2.5_00008.1_g00028.1  92 QYRGVRERP-WGKWAAEIRDP---N-KaARVWLGTFHTAEDAAIAYDEAALKFKG 141
                              69****888.**********9...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-3291150IPR001471AP2/ERF domain
PfamPF008479.8E-1292141IPR001471AP2/ERF domain
SMARTSM003802.9E-3792155IPR001471AP2/ERF domain
PROSITE profilePS5103224.23692149IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2192150IPR016177DNA-binding domain
PRINTSPR003676.6E-1193104IPR001471AP2/ERF domain
CDDcd000181.16E-2798150No hitNo description
PRINTSPR003676.6E-11115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDRTRHGKRP YESKDNNNNN MYSSGRSQHD MSTMVSVLSQ VIGNSSSSSS SSSASFEHHT  60
PLVTLNHRST AAMQNQFPQF NQQGNEKRRR RQYRGVRERP WGKWAAEIRD PNKAARVWLG  120
TFHTAEDAAI AYDEAALKFK GTKAKLNFPE RVQSKTDQFG TPYLITTSHD QFSLGDVHRY  180
ARNGSNNYNT DLNFGVSSQS IYRQSGFEPS FVSESPSITS LVQQAEPSYN QQQEYENVVT  240
CSSSWLFDSS WEEFEDPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2491152163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2491154468ATERF1
3gcc_A1e-2491154468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-69HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016578393.19e-94PREDICTED: ethylene-responsive transcription factor ERF114-like isoform X2
SwissprotQ9FH541e-47EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1U8HB762e-92A0A1U8HB76_CAPAN; Ethylene-responsive transcription factor
TrEMBLA0A2G2XZQ32e-92A0A2G2XZQ3_CAPAN; ethylene-responsive transcription factor ERF114-like isoform X2
STRINGSolyc06g068830.1.15e-86(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.17e-28ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]