PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g100040.1.1
Common NameLOC101246904
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 461aa    MW: 51652.6 Da    PI: 5.9107
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g100040.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.18.7e-22127224185
            trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                         +Wt++ v++Li+++  ++++ + +             +kk++W+ vs+ m++ g+++sp+qC++k+++lnkrykk++++ +++ ++ ++++
  Solyc12g100040.1.1 127 KWTDNVVRLLIQVVACVGDDGSLEGpgvglkrksaclQKKGKWKTVSRIMMSNGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCAVVEN 217
                         7**************8888888433355566667788**********************************************55889988 PP

            trihelix  79 cpyfdql 85 
                          ++ d++
  Solyc12g100040.1.1 218 PVLMDSM 224
                         8888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.8E-19125251No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MNSSGMGGGF LSGYNGGFLG MNMLQQPEST SNNAVLGHQM NHNNVQSSVS AKMGLEHEKT  60
IGLMDAQGCM AYGKDKAVGP SNVVYNTSNN PNSNTSDEDE PSFNEDGNGE NNGGAPGKKG  120
SPWQRMKWTD NVVRLLIQVV ACVGDDGSLE GPGVGLKRKS ACLQKKGKWK TVSRIMMSNG  180
CHVSPQQCED KFNDLNKRYK KLNDILGRGT SCAVVENPVL MDSMPQLSAK AKDTVKKILN  240
SKHLFYREMC AYHNGQKIPD CNDLEFPAHS SPVAAPCAKD HNGSQGDEAE ENDESDDDDD  300
ESDDNHGDGD ARKIGDFDER MRRVEENGYF LPQINGNDNF LAEINEFFHD PTKSQWDKKM  360
WIKKRMLQLE EEKIGIQAEA FELEKRQVKW QRFCRKKDRE FEIERLENKK LMLENEHMAL  420
QLKHKQHELD STKPNISFNS APLSLDRPMG RDQLDAARYH *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2127920.0Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252856.10.0PREDICTED: uncharacterized protein LOC101246904
TrEMBLK4DI250.0K4DI25_SOLLC; Uncharacterized protein
STRINGSolyc12g100040.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129131720
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.19e-68
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]