PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g100040.1.1

Common Name

LOC101246904

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 461aa MW: 51652.6 Da PI: 5.9107

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g100040.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.1	8.7e-22	127	224	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 +Wt++ v++Li+++ ++++ + + +kk++W+ vs+ m++ g+++sp+qC++k+++lnkrykk++++ +++ ++ ++++ Solyc12g100040.1.1 127 KWTDNVVRLLIQVVACVGDDGSLEGpgvglkrksaclQKKGKWKTVSRIMMSNGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCAVVEN 217 7************8888888433355566667788********************************************55889988 PP trihelix 79 cpyfdql 85 ++ d++ Solyc12g100040.1.1 218 PVLMDSM 224 8888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.8E-19	125	251	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MNSSGMGGGF LSGYNGGFLG MNMLQQPEST SNNAVLGHQM NHNNVQSSVS AKMGLEHEKT 60 IGLMDAQGCM AYGKDKAVGP SNVVYNTSNN PNSNTSDEDE PSFNEDGNGE NNGGAPGKKG 120 SPWQRMKWTD NVVRLLIQVV ACVGDDGSLE GPGVGLKRKS ACLQKKGKWK TVSRIMMSNG 180 CHVSPQQCED KFNDLNKRYK KLNDILGRGT SCAVVENPVL MDSMPQLSAK AKDTVKKILN 240 SKHLFYREMC AYHNGQKIPD CNDLEFPAHS SPVAAPCAKD HNGSQGDEAE ENDESDDDDD 300 ESDDNHGDGD ARKIGDFDER MRRVEENGYF LPQINGNDNF LAEINEFFHD PTKSQWDKKM 360 WIKKRMLQLE EEKIGIQAEA FELEKRQVKW QRFCRKKDRE FEIERLENKK LMLENEHMAL 420 QLKHKQHELD STKPNISFNS APLSLDRPMG RDQLDAARYH *

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MNSSGMGGGF LSGYNGGFLG MNMLQQPEST SNNAVLGHQM NHNNVQSSVS AKMGLEHEKT  60
IGLMDAQGCM AYGKDKAVGP SNVVYNTSNN PNSNTSDEDE PSFNEDGNGE NNGGAPGKKG  120
SPWQRMKWTD NVVRLLIQVV ACVGDDGSLE GPGVGLKRKS ACLQKKGKWK TVSRIMMSNG  180
CHVSPQQCED KFNDLNKRYK KLNDILGRGT SCAVVENPVL MDSMPQLSAK AKDTVKKILN  240
SKHLFYREMC AYHNGQKIPD CNDLEFPAHS SPVAAPCAKD HNGSQGDEAE ENDESDDDDD  300
ESDDNHGDGD ARKIGDFDER MRRVEENGYF LPQINGNDNF LAEINEFFHD PTKSQWDKKM  360
WIKKRMLQLE EEKIGIQAEA FELEKRQVKW QRFCRKKDRE FEIERLENKK LMLENEHMAL  420
QLKHKQHELD STKPNISFNS APLSLDRPMG RDQLDAARYH *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC212792	0.0	Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004252856.1	0.0	PREDICTED: uncharacterized protein LOC101246904
TrEMBL	K4DI25	0.0	K4DI25_SOLLC; Uncharacterized protein
STRING	Solyc12g100040.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12913	17	20
Representative plant	OGRP2796	13	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	9e-68

Link Out ? help Back to Top
Phytozome	Solyc12g100040.1.1
Entrez Gene	101246904

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]