PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g098460.1.1
Common NameLOC101263298
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 210aa    MW: 23499.3 Da    PI: 5.8749
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g098460.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772.1e-2438122186
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f kvltpsdv+++  +v+p+++a ++      + + ++ ++d+s +sW++kl y+++s+++++t+GW +Fv+a++Lk+gD+++F l +
  Solyc12g098460.1.1  38 FHKVLTPSDVGNKT-FVIPRRYALKYfsH--IQHNEEVDFYDSSTQSWRFKLFYCQSSKKFTFTRGWHKFVQAKNLKAGDTIIFNLCE 122
                         89*********997.***********643..445669***********************************************9754 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-2529120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.23E-2237123IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-2037120No hitNo description
PROSITE profilePS5086313.98737142IPR003340B3 DNA binding domain
PfamPF023626.5E-2238122IPR003340B3 DNA binding domain
SMARTSM010197.4E-1538142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEGQSNNVSD SRLMKGVLDE QNSQPTMGNS ESSLQQLFHK VLTPSDVGNK TFVIPRRYAL  60
KYFSHIQHNE EVDFYDSSTQ SWRFKLFYCQ SSKKFTFTRG WHKFVQAKNL KAGDTIIFNL  120
CEIKNGTHEN SNTFVIDVVK NDEGLSMDLA LNHNDVAVDV DAAPNDEGLP MDLALNHNDV  180
AVDVDAAPTP VLLFGKQIGW TKSKRGNEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-15351355108B3 domain-containing transcription factor NGA1
5os9_B1e-15351355108B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g098460.1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019067024.21e-156AP2/ERF and B3 domain-containing transcription factor At1g50680-like
TrEMBLA0A3Q7JYQ81e-155A0A3Q7JYQ8_SOLLC; Uncharacterized protein
STRINGSolyc12g098460.1.11e-156(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1637544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.19e-24RAV family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]