PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g087970.1.1
Common NameLOC101249442
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 570aa    MW: 60062.1 Da    PI: 7.2355
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g087970.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.2e-08203247144
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                         r++W++ Ed  l+ av++ G g+W+ I +      Rt+ q+  rw
  Solyc12g087970.1.1 203 RKPWSEAEDVELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 247
                         789************************984222488888888888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.92198255IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-13199250IPR009057Homeodomain-like
SuperFamilySSF466894.24E-12199253IPR009057Homeodomain-like
SMARTSM007171.2E-8202253IPR001005SANT/Myb domain
PfamPF002491.3E-6203247IPR001005SANT/Myb domain
CDDcd116601.03E-13204252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MFEKMKKQKC FISEEDIAIL LQRYSVSTVL AILREVGQVA DEKIDWNVMV RKSTTGITNA  60
REYQMLWRHL AYRHDLIDKF DDEAQPLDDD SDLEFELEAF PAVSSEASAE AAASAKMLIA  120
SGAPNDANML NGSTIEAPLT INIPNGQTSR TGMDNSFQGT SMHGTNITVP VAVQKQPLST  180
VVAAEGLDTH GPGCTNLPPR RKRKPWSEAE DVELIAAVQK CGEGNWANIL KGDFKGDRTA  240
SQLSQRWAII RKRQGTMVGN GSQLSEAQLA ARHAMSHALN MPIGASVGPN SGGGSSNSSL  300
PVTADLASGG AQSQHQQDPL SSKPRIVPQK PAPKPTTSSD SMVKVTAVAA GARIATSSNS  360
ASQVKLAQPK TPLQIPGGGS AVKSSVLGST NGLPSNVHFI RTGLVSHSAG PPKAVHSAGP  420
SHASRPGTQQ GLSHSLKPAS PTVQPKPIGN SSKPNALAVP TAPTSTPVAE LKVNTNQEVQ  480
QDQTPPSVNS LIKVSESKEH KKEDRDPVHA NAPGVQVQEK LISLQGQEIA NNDTSDPNEV  540
PTRTESGSAN GGDPSKEPAE TENGKNKME*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198204PRRKRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.55850.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g087970.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0142000.0Lycopersicon esculentum clone 133377F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252718.10.0uncharacterized protein LOC101249442
RefseqXP_010314587.10.0uncharacterized protein LOC101249442
TrEMBLA0A3Q7JBJ60.0A0A3Q7JBJ6_SOLLC; Uncharacterized protein
STRINGSolyc12g087970.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34342237
Representative plantOGRP59231520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-68MYB_related family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]