PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g056430.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 204aa    MW: 22987.8 Da    PI: 5.7436
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g056430.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-174293156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        + ++GVr +  + +Wv+eIr+p++   +kr++lg++ tae+Aa+a++ a+++l+ge
  Solyc12g056430.1.1 42 PVFRGVRKRD-NDKWVCEIREPTK---QKRIWLGTYLTAEMAARAHDVAALALKGE 93
                        579****999.8*********964...5*************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-114293IPR001471AP2/ERF domain
PROSITE profilePS5103220.75843100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-2943102IPR001471AP2/ERF domain
SMARTSM003801.1E-2643106IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2043102IPR016177DNA-binding domain
PRINTSPR003671.5E-64455IPR001471AP2/ERF domain
CDDcd000189.89E-2744102No hitNo description
PRINTSPR003671.5E-66682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MNNSSNSCSS IPSDEGSIIL ESSNKSKKRA AGRKKFKETR HPVFRGVRKR DNDKWVCEIR  60
EPTKQKRIWL GTYLTAEMAA RAHDVAALAL KGELAKLNFA DSAWRLQVPV SKDPKELRQA  120
AARAVEAFEN VREVAPQENN IVVDCNMMVD ENNNSNSCGI EEWVANMEEE SLFSPNPCLF  180
GSHFNWDDHV ESDVEVSLWN YTI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g056430.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025884427.11e-149dehydration-responsive element-binding protein 1E-like
SwissprotQ9SGJ62e-50DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLA0A3Q7JAC11e-148A0A3Q7JAC1_SOLLC; Uncharacterized protein
STRINGSolyc12g056430.1.11e-149(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.25e-40ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]