PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g043090.1.1
Common NameLOC101266492
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 376aa    MW: 42886.9 Da    PI: 4.6325
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g043090.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.11.3e-14137221286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         W+++e+  L++a   +  r +r++l+   W+ev++++ r  ++er+ +qC+++++ l+k+ykk+k    + t  s+s+++yf++++
  Solyc12g043090.1.1 137 WSENETFILLDAWGTRFVRHGRKSLRSEEWQEVADRVsRGSKIERTDTQCRNRLDTLKKKYKKEKMKFAE-TGSSTSKWVYFKKMD 221
                         *************************************566788**********************99998.5777789*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.214135194IPR017877Myb-like domain
PfamPF138376.2E-21136223No hitNo description
Gene3DG3DSA:1.10.10.602.5E-4137202IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDDIEDNGRY PSNPYGMNQG YESSNRQKLP VHDPSYSRHV DNQYVEEADD DEEVDGEEEE  60
EDDDGEENGV QRIGKDVFDD DDDDDDEYGD LQRHQKKRKL KSLLSSYEFA PRVPPPSTTA  120
ATAPKPSFGG RNPLSDWSEN ETFILLDAWG TRFVRHGRKS LRSEEWQEVA DRVSRGSKIE  180
RTDTQCRNRL DTLKKKYKKE KMKFAETGSS TSKWVYFKKM DMLLTSTPQK AGVSCGMDSG  240
EYVFMSPKAY LNRANGLDEM RDSPANSESA DGEEDGSEDL PPKRSRNVQP GGNGNGNGHS  300
FKLIADSIHK FSEIYVKIEN SKRQQMMELE KMRMDFHREL ELQKRQIMER AQAEIARIRQ  360
GSDEENDMSA ENVSG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.80640.0callus| flower| fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252336.10.0PREDICTED: trihelix transcription factor ASIL1-like
RefseqXP_004252337.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLK4DF970.0K4DF97_SOLLC; Uncharacterized protein
STRINGSolyc12g043090.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.15e-66Trihelix family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]