PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g035520.1.1
Common NameLOC101055567
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CAMTA
Protein Properties Length: 974aa    MW: 108982 Da    PI: 6.6755
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g035520.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1168.69.5e-53121272116
                CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                         ++e + rwl++ e++ iL+n++  +l+++++++p sgs++L+n++++ryfrkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+n
  Solyc12g035520.1.1  12 VQEgRFRWLRPAEVLFILQNHDDRQLAHQPPQKPASGSMFLFNKRVLRYFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEKN 102
                         667799************************************************************************************* PP

                CG-1  92 ptfqrrcywlLeeelekivlvhyle 116
                         ++fqrr+yw+L+ ++e+ivlvhy++
  Solyc12g035520.1.1 103 SNFQRRSYWILDPAYEHIVLVHYRD 127
                         ***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.4588134IPR005559CG-1 DNA-binding domain
SMARTSM010769.8E-7211129IPR005559CG-1 DNA-binding domain
PfamPF038594.1E-4716127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.3E-10403492IPR013783Immunoglobulin-like fold
PfamPF018339.3E-11407490IPR002909IPT domain
CDDcd001023.13E-8407491No hitNo description
SuperFamilySSF812961.4E-19407491IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.208.1E-13604700IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.594606698IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.55E-13610701IPR020683Ankyrin repeat-containing domain
CDDcd002044.89E-12627698No hitNo description
PfamPF127963.3E-6627699IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.885639671IPR002110Ankyrin repeat
SMARTSM0001582756778IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.291757786IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.96E-6759863IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000156.3815837IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.401816845IPR000048IQ motif, EF-hand binding site
PfamPF006120.014818836IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022838860IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.883840864IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-5841860IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 974 aa     Download sequence    Send to blast
MAESGYNTND LVQEGRFRWL RPAEVLFILQ NHDDRQLAHQ PPQKPASGSM FLFNKRVLRY  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE KNSNFQRRSY WILDPAYEHI  120
VLVHYRDITE GRQIAAFMSQ SSPISSTFPL SPSLYSTQHP GFNVPGTESY QQYQDESRPG  180
YGEICSDAVI HSNGMNVSDI TRMMEGVSNS PKVEISQALR RLEEQLNLND DSSSDIYSLY  240
SEIENSNDAE NVVHDKSSLV QIQDNSNNFL FLPHSGESSE SRDQLLNLDN SMWKEMLDHC  300
RSSPASQPQA KCFEKLDENG MLQTSSGSEP IEAIKSDRWP IIGGKEALKC SVTNLKQVDD  360
FKYIGCAQIN VFGSYPDQCT TIFDQDQIGI SSETNMSLTI VQKQKFTIHD ISPDWGYASD  420
ATKVVIIGSY LCNPSEYTWT CMFGDTEVPV QIIKDGAIRC QAPPHLPGKV ALCVTTGNRT  480
PCSEVREFEY RAKFDDRGQN VVPEVGGASK SSEELLLLVR FVQMLLSDSS VQIGDGSELS  540
NDILEKSKAS EDSWSQVIES LLFGTSTSTV TIDWLLQELL KNKLQQWLSS KLQVKNNEMV  600
YSLSRKDQGI VHMIAGLGFE WALHPVLNAG VSANFRDIRG WTALHWAARF GREKMVASLI  660
ASGAFAGAVT DPSSQDPFGK TAASIASSCG HKGVAGYLSE VALTSHLTSL TLEECDVSKG  720
TADIEAEQTI SNITTTSPVT HEDQLSLKDT LDAVRNAAQA AARIQSAFRA HSFRKRRLRE  780
AAHVATTCRD EYCILSNDVL GLSAASKLAF RNVRDYNSAA LSIQRKYRGW KGRKDFLVFR  840
QKVVKIQAHV RGYQVRKEYK VCWAVGILEK VVLRWRRRGV GLRGFRLEDE PIEESENEDI  900
LKLFRKQKVD AAINEAVSRV LSMVDSPEAR QQYRRILEKY RQAKAEVAGA KSDAISTAHS  960
DISNVENNDV YHS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.101250.0fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g035520.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5660470.0Solanum lycopersicum calmodulin-binding transcription factor SR2 mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010314155.10.0calmodulin-binding transcription factor SR2 isoform X4
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLH8ZRY20.0H8ZRY2_SOLLC; Calmodulin-binding transcription factor SR2
STRINGSolyc12g035520.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39322037
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-180Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Yang T,Peng H,Whitaker BD,Conway WS
    Characterization of a calcium/calmodulin-regulated SR/CAMTA gene family during tomato fruit development and ripening.
    BMC Plant Biol., 2012. 12: p. 19
    [PMID:22330838]
  3. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  4. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]