PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g016150.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17645.1 Da    PI: 5.3822
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g016150.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.14.6e-131748940
                        HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
              SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviif 40
                        r+  + kR + ++KKAeELS+ Cd+eva+iif
  Solyc12g016150.1.1 17 RNSILDKRVTSLFKKAEELSIVCDVEVAIIIF 48
                        555678*************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.881148IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-4160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-161294IPR002100Transcription factor, MADS-box
PfamPF003191.0E-121351IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MATKRLRDTA NYNENVRNSI LDKRVTSLFK KAEELSIVCD VEVAIIIFRP GKIQPITWKS  60
PSLAQDVLTR YLSFIEFKRL SKLVTHEDYL QKKVDKKEEQ ISKLEKMNEM EESINDPWFI  120
QTIATLGDVS GVESAQKEGK GVNVEDDGHS KDLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g016150.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252136.12e-86MADS-box protein AGL24-like
TrEMBLK4DD491e-109K4DD49_SOLLC; Uncharacterized protein
STRINGSolyc12g016150.1.11e-110(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.12e-15AGAMOUS-like 96
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]