PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g011260.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 236aa    MW: 26593.3 Da    PI: 7.144
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g011260.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like47.44.2e-15110163255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+ Wt++LH++Fv +v+  GG+    P++il+ m   g++  ++k  LQ YR 
  Solyc12g011260.1.1 110 PRMLWTEDLHREFVAVVDAYGGPWAVKPRHILKEMAHLGISHCQIKNRLQSYRA 163
                         8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.05E-9107166IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-13108165IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-12110164IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MFPLPPSPVV KIGNFQSPII PTMQLRSDEL MSLQQSPFNY QPANDYSFLE NHGLMRLFGG  60
LNTINNNVVN YQDPFMFNPN VLNFNVAQQV QQELGQQPNN VGSTSRVKPP RMLWTEDLHR  120
EFVAVVDAYG GPWAVKPRHI LKEMAHLGIS HCQIKNRLQS YRAKLNPNDA GGRKYISKAS  180
SKKELIQDVQ EQLKNVDGGK VDDDVCVPQL PTEAKRMEAH ISPEDAFIEG LLNWI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g011260.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092751e-126Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0131P16, complete sequence
GenBankEU1247361e-126Solanum lycopersicum clone C12HBa0143N09, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025884461.11e-59transcription factor HHO6-like
TrEMBLA0A3Q7J4J11e-157A0A3Q7J4J1_SOLLC; Uncharacterized protein
STRINGSolyc12g011260.1.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14605411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-10G2-like family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]