PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g010890.1.1
Common NameLOC101055599
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 324aa    MW: 35825.6 Da    PI: 9.5182
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g010890.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.61.1e-1557147186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  +++Liea  ++  +l+rg+l++++W+ev++++       ++  r+ +qCk++++ l+k+yk +k++ ++ +s+ + ++p+f++l+
  Solyc12g010890.1.1  57 CWSEAATHTLIEAWGSLYVELKRGNLRQKHWQEVANAVnklhgNTKKQFRTDIQCKNRIDTLKKKYKIEKARVSQSHSRYVPQWPFFNSLD 147
                         7*************************************999986777779***********************99999**********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-2455148No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MSDDDLVASP SSNNNSPSPS PSPPPSSVKN ELATLPPPPM IPPASTRPAA FPAREDCWSE  60
AATHTLIEAW GSLYVELKRG NLRQKHWQEV ANAVNKLHGN TKKQFRTDIQ CKNRIDTLKK  120
KYKIEKARVS QSHSRYVPQW PFFNSLDVLI GDNFKPSPLP VTVAPRRKTP PLLPPPTSAV  180
PVGPRSKRPA AVMEDVVSRR NFSAMAAAAA AAASEDSDEE EESETSSPAT FTASAPSRRK  240
ESGALAEGCS RLAEAIGRFA EIYERVEDAK QRQMVELEKQ RMQFAKDLEI QRMKLIMESQ  300
VQLEKLKRAK NSSQADGYLY KEC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.127650.0fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2360470.0Solanum lycopersicum chromosome 12 clone LE_HBa-210E10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251804.10.0PREDICTED: trihelix transcription factor ASIL1 isoform X2
TrEMBLK4DCH50.0K4DCH5_SOLLC; Uncharacterized protein
STRINGSolyc12g010890.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-66sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]