PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g009580.1.1
Common NameLOC101258923
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family YABBY
Protein Properties Length: 192aa    MW: 21795.6 Da    PI: 8.3868
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g009580.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY185.92e-57111577170
               YABBY   7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 
                          e++Cy+ CnfCn +l+vsvP + l+ +vtvrCGhCt+l svn+a a ++ + ++hl++++ +     +          + k + as+s++
  Solyc12g009580.1.1  11 FEKLCYIPCNFCNIVLVVSVPCSNLLDIVTVRCGHCTNLWSVNMAAAFHTNSWQNHLHHQVGNYTNSPHD---------QYKVDFASSSIT 92 
                         589****************************************************977665543222221.........122222222222 PP

               YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         +     n++ e     +v+rPPekrqr Psayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+i fgl
  Solyc12g009580.1.1  93 N-----NSTLE---ERNVNRPPEKRQRGPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIQFGL 157
                         2.....22222...23589****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.9E-6612157IPR006780YABBY protein
SuperFamilySSF470955.11E-8102151IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.9E-4104151IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSSSYIDSTN FEKLCYIPCN FCNIVLVVSV PCSNLLDIVT VRCGHCTNLW SVNMAAAFHT  60
NSWQNHLHHQ VGNYTNSPHD QYKVDFASSS ITNNSTLEER NVNRPPEKRQ RGPSAYNQFI  120
KEEIQRIKAN NPDITHREAF STAAKNWAHF PHIQFGLMLE TDNQAKLGAS ENKEKLIMHR  180
AALPKIKTFT F*
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g009580.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2095883e-68Solanum lycopersicum DNA sequence from clone LE_HBa-146I19 on chromosome 12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251722.11e-143axial regulator YABBY 5-like isoform X1
SwissprotQ8GW461e-74YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A3Q7J3Z51e-142A0A3Q7J3Z5_SOLLC; Uncharacterized protein
STRINGSolyc12g009580.1.11e-143(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Representative plantOGRP22101236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.24e-77YABBY family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]