PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g009240.1.1
Common NameLOC101253257
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 249aa    MW: 27838.7 Da    PI: 4.322
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g009240.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.8e-191868155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s y+GVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aaka +aa  +l+g
  Solyc12g009240.1.1 18 SLYRGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAAKAFDAALFCLRG 68
                        57*****999.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-201877IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-281977IPR001471AP2/ERF domain
PROSITE profilePS5103221.7991976IPR001471AP2/ERF domain
PfamPF008472.3E-111968IPR001471AP2/ERF domain
SMARTSM003801.2E-311982IPR001471AP2/ERF domain
CDDcd000185.42E-282078No hitNo description
PRINTSPR003678.8E-102031IPR001471AP2/ERF domain
PRINTSPR003678.8E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVKPNSKDTE FSQSSSSSLY RGVRKRKWGK WVSEIRLPNS RERIWLGSYD TPEKAAKAFD  60
AALFCLRGKG ANFNFPENPP EIRNGRTMTP SEIQSAAAQF ANNTEPELIR VGPRENSDLS  120
SSSSEIFRAE SPSVSVSDRV ESEKTEITLG NDFIDVYRVE SRVESEKTEM SLDNGFVDMF  180
SSLGTVNDMS DFGIFPGFDD LSGEFFIPPP SSPQPSPLQM PNLESLEEEN YLNYDGFQSQ  240
GTSFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-151477973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.134630.0callus| flower| fruit| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g009240.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251702.10.0ethylene-responsive transcription factor ERF017
TrEMBLA0A3Q7J3S71e-179A0A3Q7J3S7_SOLLC; Uncharacterized protein
STRINGSolyc12g009240.1.11e-180(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.15e-55ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]