PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g008350.1.1
Common NameDREB2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 300aa    MW: 32994.6 Da    PI: 4.617
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g008350.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-1787135355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+ +++g
  Solyc12g008350.1.1  87 YVGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATPEMAARAHDVAAMSIKG 135
                         99***998.**********854...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-1186135IPR001471AP2/ERF domain
PROSITE profilePS5103221.91886143IPR001471AP2/ERF domain
SMARTSM003807.7E-3486149IPR001471AP2/ERF domain
CDDcd000181.02E-3087143No hitNo description
Gene3DG3DSA:3.30.730.107.2E-3087144IPR001471AP2/ERF domain
PRINTSPR003671.3E-88798IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2087143IPR016177DNA-binding domain
PRINTSPR003671.3E-8109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MIIMSTEQPN CSESTESSCN SSSSSSPSSP SSVLLQPLPQ INSKNRLKRC RGEEEVEEEE  60
DVVVNNPNPK KMNKNNNNGS STSVVSYVGV RMRAWGKWVS EIREPKKKSR IWLGTFATPE  120
MAARAHDVAA MSIKGTSAIL NFPQFSHLLP RPVTCSPRDI QNAAVKAAHM DHLNPKFSIL  180
PETSAATMTS SSSSLSLVSG VTSSSSSFQD DEESRPSPPE LIPEATGQLS EIVELPKLGS  240
SYELVESTQS LFESDEWWDN NYGNCEYFFG QDNYISSNME FTGLENVVST SFESFLWQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1676144473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.39840.0fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. Physiological, biochemical and transcriptomic analyses showed that SlDREB2 enhanced plant tolerance to salinity by improvement of K(+) /Na(+) ratio, and proline and polyamines biosynthesis.
    [PMID: 26082265]
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g008350.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5000120.0Lycopersicon esculentum dehydration responsive element binding protein (DREB2) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234759.10.0dehydration responsive element binding protein
SwissprotQ9LYD37e-46DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLQ8GZF10.0Q8GZF1_SOLLC; Dehydration responsive element binding protein
STRINGSolyc12g008350.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.17e-43ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  4. Hichri I, et al.
    SlDREB2, a tomato dehydration-responsive element-binding 2 transcription factor, mediates salt stress tolerance in tomato and Arabidopsis.
    Plant Cell Environ., 2016. 39(1): p. 62-79
    [PMID:26082265]