PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g006240.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family DBB
Protein Properties Length: 270aa    MW: 29703.8 Da    PI: 4.2464
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g006240.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.7e-06444539
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        +C+ ++e++ + +C+++  +lC +C  + H+       H++
  Solyc12g006240.1.1  4 ICEYCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44
                        7*****************************65777777776 PP

2zf-B_box27.18.7e-094689440
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40
                         +C++++++++   C + +  lC++C  ++H +       H+++
  Solyc12g006240.1.1 46 LICERCNSQPAVVRCVEERISLCQNCDWSGHASsssgssmHKRQ 89
                        68*****************************7778888888875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
CDDcd000212.24E-7447No hitNo description
SMARTSM003364.4E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.7744391IPR000315B-box-type zinc finger
CDDcd000218.39E-44773No hitNo description
SMARTSM003362.34891IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGYICEYCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLICER CNSQPAVVRC  60
VEERISLCQN CDWSGHASSS SGSSMHKRQA LNSYTGCPSA AELSNIWSFL LDDPSIGDTC  120
EQRMGSMSIN DNRPRDGQDP QGKDNSQNVC AAVEANDMSI SEKSNLLVES SMPTFDNKLH  180
NMEPPIGSSS KGCYMGAKGS NLFEEDPYCD NLIMDAVDLS IENYEELFGD SLNYPDELFE  240
NENLDSFFGM KDIKGADYSY HGVNATEVT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.161820.0floral bud| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g006240.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251549.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_010313684.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE56e-74COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A3Q7J2Z40.0A0A3Q7J2Z4_SOLLC; Uncharacterized protein
STRINGSolyc12g006240.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Representative plantOGRP13751334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-72CONSTANS-like 9
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]