PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g005960.1.1
Common NameLOC101251852
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 194aa    MW: 21271.8 Da    PI: 8.4887
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g005960.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-192576156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++y+GVr ++ +gr+ AeIrdp++   ++r +lg+f+tae+Aa+a++ a+++++g+
  Solyc12g005960.1.1 25 PRYRGVRKRP-WGRFSAEIRDPVK---KARKWLGTFDTAEGAARAYDTAARSFHGA 76
                        68********.**********654...5*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-112575IPR001471AP2/ERF domain
CDDcd000184.96E-302585No hitNo description
PROSITE profilePS5103223.5382683IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-302683IPR001471AP2/ERF domain
SMARTSM003806.0E-342689IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-212684IPR016177DNA-binding domain
PRINTSPR003675.9E-102738IPR001471AP2/ERF domain
PRINTSPR003675.9E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MPRRKNPEIN GSRSVVFQQS VIEPPRYRGV RKRPWGRFSA EIRDPVKKAR KWLGTFDTAE  60
GAARAYDTAA RSFHGAKAKT NFPVLPPYGE NQFENLQQSR PASSSMSSTV ESSSDARALC  120
KTMQPRIEIP RRIPMGEGHS DCDSSSSVVD GNCIGGGGGD DDQTSSFCKD PLPFDLNFPP  180
PSDDFQIITP LCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-192790670ATERF1
3gcc_A2e-192790670ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.94390.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g005960.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2095850.0Solanum lycopersicum DNA sequence from clone LE_HBa-26C13 on chromosome 12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019067242.11e-141ethylene-responsive transcription factor 7
TrEMBLA0A3Q7J1S81e-125A0A3Q7J1S8_SOLLC; Uncharacterized protein
STRINGSolyc12g005960.1.11e-141(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14369912
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.14e-30ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]