PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g069500.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARF
Protein Properties Length: 700aa    MW: 76990.3 Da    PI: 8.2485
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g069500.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.24.3e-25113214199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++         ++ +  t+t +d +g+sW++++iyr++++r++lt+GW++Fv++++L +gD++vF  
  Solyc11g069500.1.1 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVTAKDVHGESWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL- 200
                         89****************************997656555..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++el+v+++r+
  Solyc11g069500.1.1 201 -RAENGELCVGIRRA 214
                         .449999******97 PP

2Auxin_resp115.83.9e-38273356183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa  as++++FevvY+Pra t+eF+v++++v++a++++++ GmRfkmafetedss++++ +Gt+++++ +dp+rWpnS+Wr+L+
  Solyc11g069500.1.1 273 AAYLASSGQPFEVVYYPRANTPEFCVRASSVNAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSIQLADPIRWPNSPWRLLQ 356
                         67789*****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-38105219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-29110216IPR015300DNA-binding pseudobarrel domain
CDDcd100174.76E-23112213No hitNo description
PfamPF023622.9E-23113214IPR003340B3 DNA binding domain
PROSITE profilePS5086313.535113215IPR003340B3 DNA binding domain
SMARTSM010191.7E-24113215IPR003340B3 DNA binding domain
PfamPF065072.0E-33273356IPR010525Auxin response factor
PROSITE profilePS5174518.225588668IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MKEVLEKCVD SQLWHACAGG MVQIPPVNSK VYYFPQGHAE HTLMNVDFSA LPRSPALILC  60
RVAAVKFLAD PETDEVYAKI RVVPVGNKGN DFDDDDDILG SNESGTAEKP NSFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVTAKDVHG ESWKFRHIYR GTPRRHLLTT  180
GWSSFVNQKK LVAGDSIVFL RAENGELCVG IRRAKRGGIG GPEAPSGWNS GAGNYGGFSA  240
FLREEMSKNG NLTSPTRSLR GKGRVRPESV VEAAYLASSG QPFEVVYYPR ANTPEFCVRA  300
SSVNAAMRIQ WCSGMRFKMA FETEDSSRIS WFMGTISSIQ LADPIRWPNS PWRLLQVAWD  360
EPDLLQNVKH VSPWLVELVS NMPVIHLSPF SPPRKKLRLP PDFSLDSQFQ LPSFSGNPLR  420
SSSPFCCLSD NITAGIQGAR HAQFGVPLLD LHLSNKLPSG LLPPSFQRVA ANSQLPNVIN  480
KCQNDRNDNI SCLLTMGTSS KTLDKNDSVN TPRFLLFGQP ILTEQQISNG CSVSAPQVVQ  540
TGKDLGRIQP INEKHPSEQK GSIQDNLSSA TFFWNRGYHA AELGVLNTGH CKVFLESEDV  600
GRTLDLSVMG SYEELYKRLA NMFGLERPDM LTRVLYHDAT GAVKHTGDEP FSDFVKSAKR  660
LTILMNSSSN IKRKWLTGLA TAERGLDSSN QAGPLSIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-81937751388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.75150.0flower| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Function -- GeneRIF ? help Back to Top
  1. propose that repression of SlARF10 by Sl-miR160 is essential for auxin-mediated blade outgrowth and early fruit development
    [PMID: 22287097]
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g069500.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1439410.0Solanum lycopersicum auxin response factor 10 (ARF10) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234796.20.0auxin response factor 10A
RefseqXP_010313187.10.0auxin response factor 10 isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A3Q7IZS50.0A0A3Q7IZS5_SOLLC; Auxin response factor
STRINGSolyc11g069500.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Wu J, et al.
    Identification, isolation and expression analysis of auxin response factor (ARF) genes in Solanum lycopersicum.
    Plant Cell Rep., 2011. 30(11): p. 2059-73
    [PMID:21735233]
  4. Hendelman A,Buxdorf K,Stav R,Kravchik M,Arazi T
    Inhibition of lamina outgrowth following Solanum lycopersicum AUXIN RESPONSE FACTOR 10 (SlARF10) derepression.
    Plant Mol. Biol., 2012. 78(6): p. 561-76
    [PMID:22287097]
  5. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]