PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g067280.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 295aa    MW: 32071.7 Da    PI: 6.6524
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g067280.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.14.5e-341670155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Solyc11g067280.1.1 16 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 70
                        79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3371373IPR017930Myb domain
SuperFamilySSF466893.4E-181570IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-321571IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-261671IPR006447Myb domain, plants
PfamPF002491.2E-91869IPR001005SANT/Myb domain
PfamPF143792.5E-22102148IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDPSCGGNNS SSLASKQRLR WTNELHERFV DAVAQLGGPD RATPKGVLRV MGVQGLTIYH  60
VKSHLQKYRL AKYLPDSSSD GKNSDKKEPR DMLSSLDGSS GVEITTALKL QMEVQKRLHE  120
QLEVQKQLQL RIEAQGKYLK KIIEEQQRLS GVLSDVPGSG VTALPTGDNG PESDSRTDPG  180
TPAPSSEAPH VDKPVNAHTS TKSLSMDESF SSHHSPLSPD SDCQETSLME SPNGESSSKK  240
QRVGNVALPH QILESSVSPP YQQPHSVFMM RDQFNHTSGL SLDIEDHKVS GSNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-241673259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-241673259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-241673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-241673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-241673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-241673158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-241673259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-241673259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-241673259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-241673259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-241673259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-241673259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.104740.0callus| flower| fruit| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g067280.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307345.10.0MYB-CC type transfactor
RefseqXP_010313350.10.0MYB-CC type transfactor isoform X1
SwissprotQ9SJW01e-110PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A3Q7J0360.0A0A3Q7J036_SOLLC; Uncharacterized protein
STRINGSolyc11g067280.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27962451
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.14e-96G2-like family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]