PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g064950.1.1
Common NameLOC101262685
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 325aa    MW: 36170.9 Da    PI: 9.0819
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g064950.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.4e-103780245
                        XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                        k+ k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Solyc11g064950.1.1 37 KDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQEL 80
                        567899*************************9888888777655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.5E-83583No hitNo description
SMARTSM003383.3E-93699IPR004827Basic-leucine zipper domain
PfamPF001701.1E-73881IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4613882IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.56E-74083No hitNo description
PROSITE patternPS0003604358IPR004827Basic-leucine zipper domain
PfamPF141442.2E-31123197IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MADISPSTST DADTEDKNRF LNQQLCAVAS DGSDRPKDQK TLRRLAQNRE AARKSRLRKK  60
AYVQQLESSR MKLTQLEQEL QRARQQGIFI SGSGDQSQSM SGNGALAFDV EYARWLEEQN  120
RRINELRGAV NSHAGDAELR IIVDGILAHY DDIFRIKGDA AKADVFHILS GMWKTPAERC  180
FLWLGGFRSS ELLKLLINQL EPLTEQQLLA INNLQQSSQQ AEDALSQGME ALQQSLAETL  240
AGSLGPSGSS GNVANYMGQM AMAMGKLGTL EGFIRQADNL RQQTLQQMHR ILTTRQSARA  300
LLAITDYFSR LRALSSLWLA RPRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.123550.0callus| cell culture| flower| fruit| leaf| root| stem| trichome
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g064950.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1717351e-78Solanum lycopersicum chromosome 11 clone C11HBa0119D16, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356348.10.0PREDICTED: transcription factor HBP-1b(c38)-like
RefseqXP_015056595.10.0transcription factor TGA2.2-like
RefseqXP_025883912.10.0transcription factor TGA2.2
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0V0I8830.0A0A0V0I883_SOLCH; Putative transcription factor HBP-1b(C1)-like
TrEMBLM1AK430.0M1AK43_SOLTU; Uncharacterized protein
STRINGSolyc11g064950.1.10.0(Solanum lycopersicum)
STRINGPGSC0003DMT4000244280.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-147TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]