PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g045640.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 220aa    MW: 25378 Da    PI: 5.0787
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g045640.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP96.26.3e-3097192189
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 
                         a+g+kdrhsk++T+++++d RvRls ++a++f+d+qd+LG+d++sk+i+WL+ +ak+ai++l + +++ +s   ++++ + s ++++s+  
  Solyc11g045640.1.1  97 ATGRKDRHSKVSTAKDPKDLRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIIEAKAAIDALGEFPNNFHSTKlNPKKMQYSFDQEQSPef 187
                         589***********************************************************99954444333566666666665555544 PP

                 TCP  89 ....k 89 
                             +
  Solyc11g045640.1.1 188 sqenR 192
                         32221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.1E-2798192IPR005333Transcription factor, TCP
PROSITE profilePS5136927.466100158IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSNLNPPMNH QCQVSDEEDG SEEEEEEEEE VFQENDIGNL QSHYQNQQMP QSVYKKQEKW  60
ANFTVSEQEL NKGTRRMKPK RAKTDVIEGH GGRIIRATGR KDRHSKVSTA KDPKDLRVRL  120
SPNTAIQFYD VQDRLGYDRP SKAIDWLIIE AKAAIDALGE FPNNFHSTKL NPKKMQYSFD  180
QEQSPEFSQE NRGVPKSEYG VQEKQQEVNY DIPNLFSLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-16105158154Putative transcription factor PCF6
5zkt_B3e-16105158154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17480RRMKPKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g045640.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2434740.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-56p20 map 1, complete sequence
GenBankAC2460780.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-12e23 map 1, complete sequence
GenBankAC2465810.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-67d8 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250838.11e-158transcription factor TCP4-like
TrEMBLA0A3Q7JMM01e-162A0A3Q7JMM0_SOLLC; Uncharacterized protein
STRINGSolyc11g045640.1.11e-163(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.18e-35TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]