PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g044560.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 400aa    MW: 44135.7 Da    PI: 8.9001
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g044560.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.64e-11321376559
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke.leelkkevakl 59 
                         +r +r++kNRe+A rsR RK+a++ eLe +v++L++  ++L+k+ +e ++k+  +l
  Solyc11g044560.1.1 321 RRRKRMIKNRESAARSRDRKQAYTLELEAEVAKLKEIKQELQKKqAEFIEKQKNQL 376
                         689************************************99765145555555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-12317382IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.6E-12319376No hitNo description
PROSITE profilePS5021710.151319364IPR004827Basic-leucine zipper domain
CDDcd147071.43E-22321375No hitNo description
PfamPF001702.5E-9321379IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.19E-9321369No hitNo description
PROSITE patternPS000360324339IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MSEIFWMIYQ QIGKNHAYSL QNLYLPKRIL FVVTMGSYLN FKNFADTSQP ESSGNNSNSF  60
LAQQSSIYSF TFDELQNTCG LGKDFGSMNM DDLLKNIEES QALSSSAALG GNLQRQGSLT  120
LPRTLSQKTV DEVWRDFQKE SVVANDASGT GGSNFGQRES TLGEMTLEEF LVRAGAVQED  180
MQPAGYSNDV TFASGFTQPS CSVTIAFQQA TQNPGHQIAA NNIFNVVSTT TSSPQQPLFP  240
KQTTVEFASP MQLGSPGKRL PMSNPSANTS SVMQGGVMTM PVKGVSPGNL DTSSLSPSPY  300
ACGEGGRGRR SCTSFEKVVE RRRKRMIKNR ESAARSRDRK QAYTLELEAE VAKLKEIKQE  360
LQKKQAEFIE KQKNQLLEKM NVPWENKLIC LRRTVTGPW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.72130.0flower| fruit| leaf| root| trichome
Functional Description ? help Back to Top
Source Description
UniProtBinds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g044560.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6756920.0Solanum lycopersicum SlABF4 mRNA for ABA responsive transcription factor, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239043.20.0ABA responsive transcription factor
RefseqXP_010313017.10.0ABA responsive transcription factor isoform X2
SwissprotQ9M7Q52e-83AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBLA0A3Q7IWK80.0A0A3Q7IWK8_SOLLC; Uncharacterized protein
STRINGSolyc11g044560.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7762497
Representative plantOGRP39841024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49720.11e-67abscisic acid responsive element-binding factor 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]