PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g042580.1.1
Common NameLOC101266387
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 164aa    MW: 18308.3 Da    PI: 5.8541
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g042580.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.8e-18657156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ta++Aa+a++ a+  ++g+
  Solyc11g042580.1.1  6 SEYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETAQMAAAAYDSAAFHFRGH 57
                        569****999.**********8...557***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.49E-22666No hitNo description
SuperFamilySSF541716.54E-22665IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-32765IPR001471AP2/ERF domain
SMARTSM003806.4E-35770IPR001471AP2/ERF domain
PfamPF008478.9E-12757IPR001471AP2/ERF domain
PROSITE profilePS5103222.893764IPR001471AP2/ERF domain
PRINTSPR003672.8E-10819IPR001471AP2/ERF domain
PRINTSPR003672.8E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MSGITSEYRG VRKRKWGKWV SEIREPGKKT RIWLGSFETA QMAAAAYDSA AFHFRGHAAK  60
LNFPELIEHF PKPASSSPED IRLAAQQAAI TVQNTNSMAS SSHGHGAPVT VGLSPTEIQA  120
INDFPMDSPH MWTTHEDINY TYEMSDYQEM DDCLWDYSST NSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-18864360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-18864663ATERF1
3gcc_A2e-18864663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g042580.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5000113e-06Lycopersicon esculentum dehydration responsive element binding protein (DREB1) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250714.11e-121ethylene-responsive transcription factor ERF021
SwissprotQ9C9I22e-50ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A3Q7JLX41e-120A0A3Q7JLX4_SOLLC; Uncharacterized protein
STRINGSolyc11g042580.1.11e-121(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-45ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]