PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g022470.1.1
Common NameLOC101257428
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 304aa    MW: 33230.8 Da    PI: 6.6117
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g022470.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1085.1e-341973155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Solyc11g022470.1.1 19 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 73
                        79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4851676IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-321874IPR009057Homeodomain-like
SuperFamilySSF466897.35E-181873IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-251974IPR006447Myb domain, plants
PfamPF002491.2E-92172IPR001005SANT/Myb domain
PfamPF143792.8E-23106152IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDPANEGNNL NNNPSLASKQ RLRWTHELHE RFVDAVAQLG GPDRATPKGV LRVMGVQGLT  60
IYHVKSHLQK YRLAKYLPDS SSDGKQSDKK ESGDMLSSLD GSSTGVQINE ALKLQMEVQK  120
RLHEQLEVQR QLQLRIEAQG KYLKKIIEEQ QRLSGVLSEV PDSGVTPSAA GDNGLDSDNR  180
TDPGTPAPTS ESPHIDTSVQ EHGRSKSLSI DQSFSSQHEP LTPDSGCRET SPINSSEGER  240
SSKKQRVGTF TKADMLLPHQ ILESSLSSRY EQPNPVFVAR EQFNLSSGLS LGNEGPNVRG  300
SNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.57300.0callus| floral bud| flower| fruit| leaf| seed| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g022470.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0144620.0Lycopersicon esculentum clone 133809F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250431.10.0myb family transcription factor PHL7
RefseqXP_010312875.10.0myb family transcription factor PHL7
RefseqXP_010312876.10.0myb family transcription factor PHL7
SwissprotQ9SJW01e-120PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A3Q7IUE30.0A0A3Q7IUE3_SOLLC; Uncharacterized protein
STRINGSolyc11g022470.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27962451
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-86G2-like family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]