PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g013560.1.1
Common NameLOC104644545
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 207aa    MW: 23114.1 Da    PI: 9.7382
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g013560.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.4e-135398247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +rWT++E+  ++++   +G+g+W+ Ia+ +   Rt+ q+ s+ qky
  Solyc11g013560.1.1 53 NRWTEDEQRAFLKGLDFHGKGNWTNIAKDFVPSRTPTQVASHAQKY 98
                        69*****************************9*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.37247103IPR017930Myb domain
SuperFamilySSF466892.24E-1549103IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-1450101IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.5E-115197IPR009057Homeodomain-like
SMARTSM007174.0E-1151101IPR001005SANT/Myb domain
PfamPF002494.3E-115398IPR001005SANT/Myb domain
CDDcd001677.00E-115499No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MARNCSEDEK IIKLFGFDIT TATTTITMTT TSSAATVISE KDFMGKKMIK KGNRWTEDEQ  60
RAFLKGLDFH GKGNWTNIAK DFVPSRTPTQ VASHAQKYFV RLSDANSNSN ERKKKRKKSS  120
VFDLRIEKTE DTDQAMVPLG NNQATHNVAN YMMKSVPTVM PLTWVYIYPN SYHHASTSIS  180
TTTLDKPISG ISSSSSSEDD ILELKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117RKKKRKK
2113117KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g013560.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2471350.0Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-6o7 map 11, complete sequence
GenBankAC2540570.0Solanum lycopersicum strain Heinz 1706 chromosome 11 clone sle-28f9 map 11, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010312911.11e-153transcription factor SRM1-like
TrEMBLM1CNS82e-86M1CNS8_SOLTU; Uncharacterized protein
STRINGSolyc11g013560.1.11e-152(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74541230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-20MYB family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]