PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g006050.1.1
Common NameLOC101265792
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 200aa    MW: 22541.8 Da    PI: 4.5627
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g006050.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-2063113255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+++AeIrd s+++ + r++lg+f+taeeAa a+++a+ +l+g
  Solyc11g006050.1.1  63 SYRGVRRRP-WGKYAAEIRD-STRN-SVRVWLGTFDTAEEAALAYDQAAYALHG 113
                         6********.**********.3433.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.0963121IPR001471AP2/ERF domain
SMARTSM003807.1E-3263127IPR001471AP2/ERF domain
PfamPF008471.4E-1463113IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-2363123IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-2963122IPR001471AP2/ERF domain
CDDcd000187.99E-2964122No hitNo description
PRINTSPR003672.0E-116475IPR001471AP2/ERF domain
PRINTSPR003672.0E-1187103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDSSSSSSSY SYSQYHDHDL GFNENDTEDM LLLNVLSEAK EDSSSNNIHE ETNEGSSKEV  60
ATSYRGVRRR PWGKYAAEIR DSTRNSVRVW LGTFDTAEEA ALAYDQAAYA LHGRVAVLNY  120
PVEMVYRSLM EIDCRFEDGC SPVLALKKWH SMMKKGNNKS SSSNKKKEEK EMSYENVLVL  180
EDLGADYLEE ILMLSESNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-28641231574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g006050.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250457.11e-145ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y91e-61ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A3Q7IPE41e-144A0A3Q7IPE4_SOLLC; Uncharacterized protein
STRINGSolyc11g006050.1.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.18e-43ethylene response factor 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  4. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]