PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g084910.1.1
Common NameLOC101264877
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 361aa    MW: 40888.8 Da    PI: 6.1357
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g084910.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000182547123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ Fs+   L  H++ H
  Solyc10g084910.1.1 25 YRCSFCKRGFSNAQALGGHMNIH 47
                        9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.89E-62251No hitNo description
Gene3DG3DSA:3.30.160.606.1E-42349IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4682552IPR007087Zinc finger, C2H2
SMARTSM003550.00532547IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEKFNQIIPW SSEELLGLGH VNKFYRCSFC KRGFSNAQAL GGHMNIHRRD RARLREFSSD  60
QNLLSLDINN SVYPPPPPGN DDLLQRDNEG IISSPSKRPC VMVSCDHNPP HPPPPPLALP  120
HDVLLQREES SYGEKTISSP SKRSCVKVSC DHNPPPLIPP HDVLLQQEES SYGEKTISRP  180
SKRPCVMVSC DHNPPHPHPH PLALPHDVSL QREESSYGET TISSSSKRPC FTYDQEKDHY  240
DHNLSLVNCD LFQREVSSND ETIISSYSKR LCVTYDEEND HLITSKVNHY DHNQEVIIGD  300
HLQLPLFKET PLVKEASNCM ENGKLENKGM EQNHVSILDL ELRLGMDSTD TDPRFELHKL  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g084910.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249544.10.0uncharacterized protein LOC101264877
TrEMBLM1ARP51e-142M1ARP5_SOLTU; Uncharacterized protein
STRINGSolyc10g084910.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1866333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.17e-14C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]