PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g084180.1.1
Common NameLOC101248731
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 494aa    MW: 54589.1 Da    PI: 9.3196
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g084180.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-056789123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+k F r  nL+ H r H
  Solyc10g084180.1.1 67 FICEICNKGFQRDQNLQLHRRGH 89
                        89*******************88 PP

2zf-C2H212.80.00036144166123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Solyc10g084180.1.1 144 WKCEKCSKKYAVQSDWKAHSKTC 166
                         58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.86E-76689No hitNo description
Gene3DG3DSA:3.30.160.601.3E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121715.9E-56789IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8456789IPR007087Zinc finger, C2H2
SMARTSM003550.0226789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355110109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.86E-7139164No hitNo description
SMARTSM00355140144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MMSGDVFSFP SSVKAVLPHH HQELQTANPN PKPNTSSKKR RNLPGTPDPD AEVIALSPKS  60
LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNK LEQVKKKVYI CPEKTCIHHD  120
PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHSKTCGTRE YKCDCGTLFS  180
RKDSFITHRA FCDALAEESS RITSVGATNL INFPNTATLL NQQQANLHGG FAGCRPDFGS  240
YTTGNNNSLH QQQQQKPRLS LWLDQQAANH NNPLQISSSS NLFDSSSTGG FQEMIQMQSQ  300
NVFGSSNSTS ANFSIAEAYN SLYSDSQNSQ LTKQNSTTPM SATALLQKAA QMGSTKSNQS  360
TFFSNNFSKL NSSSSSSPNT PTFTSLQSCE TTDQIFAKKS EDYTTSLLQS NNGLFGCPNF  420
TSSGINKSIN LDEAIMQTVG MHNTQAVSMN GMDNCLTRDF LGIKHEGNCQ FLPQEIVKFA  480
SMNSSAMGLS HLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-37140209372Zinc finger protein JACKDAW
5b3h_F1e-37140209372Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.69660.0flower| fruit| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g084180.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249492.10.0zinc finger protein JACKDAW
TrEMBLM1APA70.0M1APA7_SOLTU; Uncharacterized protein
STRINGSolyc10g084180.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-102C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]