PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g080770.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 451aa    MW: 49584.2 Da    PI: 8.4386
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g080770.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.3e-11164205546
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                         k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L+
  Solyc10g080770.1.1 164 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQDLQ 205
                         7789*************************9999998888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-8160223IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.358162206IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.05E-6164208No hitNo description
PfamPF001704.8E-8164206IPR004827Basic-leucine zipper domain
CDDcd147084.12E-21164215No hitNo description
Gene3DG3DSA:1.20.5.1704.2E-8165210No hitNo description
PROSITE patternPS000360167182IPR004827Basic-leucine zipper domain
PfamPF141441.2E-33246321IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MPSFISQIPV SKNHMGTEGN NTNTSRMSEF GVLEQYLGFR IGDGVNVNRS PLFNSTSAAN  60
PAVGFDVSGT INRNLAPSNT SLSTAAPGSH VIQLQSNLVP AAGTHPENWG ESNMADSGSR  120
TDTSTDMDGD DRNQRDSRIE TGQSRAIAAS DSSDKSKEKV LDQKTLRRLA QNREAARKSR  180
LRKKAYVQQL ENSRLKLSQL EQDLQRARQQ GKYISNMADQ SNGAGASGTL AFDAEYSRWL  240
EEHNKHINEL RTAVNSHASD PELRSIVNNV TAHYDEVFRV KGNAAKADVF HVLSGMWKTP  300
AERCFMWIGG FRPSELLKLL VNQLEPLTEQ QLAGIYNLQQ SSHQAEDALS QGMEALQQSL  360
AETLANGSPA TEGSSGDVAN YMGQMAMAMG KLGTLEGFLR QADNLRQQTL QQMHRILTTR  420
QSARALLAIS EYFSRLRALS SLWLARPREQ *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.1450.0fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g080770.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1434420.0Lycopersicon esculentum NPR1-interactor protein 1 mRNA, partial cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001296800.10.0TGACG-sequence-specific DNA-binding protein TGA-2.1
RefseqXP_015055987.10.0TGACG-sequence-specific DNA-binding protein TGA-2.1 isoform X1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A3Q7IKP60.0A0A3Q7IKP6_SOLLC; Uncharacterized protein
STRINGSolyc10g080770.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-150TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]