PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g080410.1.1
Common NameLOC101260286
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 460aa    MW: 52119.4 Da    PI: 7.0479
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g080410.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.12.5e-10165194534
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeek 34 
                         k  rr+++NReAAr+sR RKka++++Le+ 
  Solyc10g080410.1.1 165 KTLRRLAQNREAARKSRIRKKAYVQQLETS 194
                         7789***********************974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-8157208No hitNo description
SMARTSM003383.3E-6161221IPR004827Basic-leucine zipper domain
PfamPF077162.4E-8161203IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.749163207IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.55E-7165204No hitNo description
PROSITE patternPS000360168183IPR004827Basic-leucine zipper domain
PfamPF141441.3E-28257332IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDSSNHQISF INQHQFFHDP RQQQQMENHK NHQISFGLSS ANPGNFINKE NNGGAYDLGE  60
LDQALFLYLD GQDPSSSSIQ DHRQNNYGMR PPTLNIFPSQ PMHIEPSSTK ANNNEQVSQA  120
TNGSKKSSQP SMDKSEPPKV TKGEGSRKVS TSSPEQDAPK TSDPKTLRRL AQNREAARKS  180
RIRKKAYVQQ LETSRIRLTQ LEHEIQRARS QGFHVGGNVL LGGDQGFQLI NRTNISSDAA  240
VFDLEYARWL EEHHRLICEL RNAVHEEQLQ EDELRIYVEN CVVHYDNIMN LKGMLAKSDV  300
FHLVSGLWKS PAERCFLWIG DFRPSEILKI IMCQIEALTE NQLLGMCGLQ KSTQEAEDAL  360
SQGLETLNQS LSDTIIASDA LILGNNNENM GNYMALAINQ LSTVEAFLRQ ADNLRHQTIH  420
RLHQILTTRQ AARCFIAIGD YFHRLRALSS LWLTRPRHE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.70210.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2442861e-154Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010312148.10.0PREDICTED: transcription factor HBP-1b(c38)-like
SwissprotP239231e-114HBP1B_WHEAT; Transcription factor HBP-1b(c38)
TrEMBLK4D2T10.0K4D2T1_SOLLC; Uncharacterized protein
STRINGSolyc10g080410.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP75161218
AsteridsOGEA22792145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-178bZIP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]