PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g080310.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 74aa    MW: 8382.6 Da    PI: 10.6916
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g080310.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-182972249
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                         y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a
  Solyc10g080310.1.1 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEA 72
                        69****999.**********965...5*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.99E-222872No hitNo description
PfamPF008475.3E-132872IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-252972IPR001471AP2/ERF domain
SMARTSM003802.4E-182973IPR001471AP2/ERF domain
PROSITE profilePS5103219.9942973IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-172972IPR016177DNA-binding domain
PRINTSPR003673.6E-113041IPR001471AP2/ERF domain
PRINTSPR003673.6E-115268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MDSYKRNPLK PWKKGPARGK GGPQNALCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAMAYD EAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-142973550ATERF1
3gcc_A3e-142973550ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g080310.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154926e-15Solanum lycopersicum chromosome 2 clone C02SLm0128E12, complete sequence
GenBankAC2265046e-15Solanum lycopersicum chromosome 2 clone C02HBa0106H06, complete sequence
GenBankAF2733336e-15Lycopersicon esculentum clone BAC 19, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249756.12e-47dehydration-responsive element-binding protein 2F
RefseqXP_015056203.12e-47dehydration-responsive element-binding protein 2F
SwissprotQ9SVX56e-38DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A3Q7ILE35e-46A0A3Q7ILE3_SOLLC; Uncharacterized protein
TrEMBLM1C6S88e-46M1C6S8_SOLTU; Uncharacterized protein
STRINGSolyc10g080310.1.17e-47(Solanum lycopersicum)
STRINGPGSC0003DMT4000609701e-46(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70982329
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-40ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]