PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g080300.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 125aa    MW: 14699.5 Da    PI: 6.3945
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g080300.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-0964115146
                         TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT....TTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg....kgRtlkqcksrwqk 46 
                         +++WT+ E+e l+++  ++     +Wk+I    g    kgRt+ ++k++w++
  Solyc10g080300.1.1  64 KLPWTKMEEETLKEGLLRFSHFhdRWKRILDFGGdvfmKGRTPGDLKDKWRN 115
                         689***************985499**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.42259117IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-1059121IPR009057Homeodomain-like
SuperFamilySSF466894.16E-1060118IPR009057Homeodomain-like
SMARTSM007177.9E-463119IPR001005SANT/Myb domain
PfamPF002497.6E-665115IPR001005SANT/Myb domain
CDDcd116607.39E-1066118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MHAEVTQVHP PQPHVPHEHV CQESSSIEVS SEEEQDEIGS GYLVQFRNQE NNFCPWIPQM  60
RRKKLPWTKM EEETLKEGLL RFSHFHDRWK RILDFGGDVF MKGRTPGDLK DKWRNISKAD  120
EKET*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.88990.0flower| fruit| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g080300.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249272.11e-85uncharacterized protein LOC101258507 isoform X1
RefseqXP_010312132.11e-85uncharacterized protein LOC101258507 isoform X1
RefseqXP_010312133.11e-85uncharacterized protein LOC101258507 isoform X1
RefseqXP_019071606.17e-86uncharacterized protein LOC101258507 isoform X2
RefseqXP_025883755.11e-85uncharacterized protein LOC101258507 isoform X1
TrEMBLA0A3Q7IKX52e-84A0A3Q7IKX5_SOLLC; Uncharacterized protein
STRINGSolyc10g080300.1.18e-89(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA340689
Representative plantOGRP1443713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.14e-08telomere repeat binding factor 3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]