PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g080200.1.1
Common NameLOC101256930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 273aa    MW: 30271.1 Da    PI: 8.1347
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g080200.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00017210232223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp C+ +Fs+   L++H ++ H
  Solyc10g080200.1.1 210 QCPQCTLRFSSVTALVSHVQKvH 232
                         7******************9988 PP

2zf-C2H216.22.9e-05244266223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp C+k F+++ +L+ H  + H
  Solyc10g080200.1.1 244 VCPRCSKGFRDPVSLVEHVEReH 266
                         7*****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.71E-11650No hitNo description
Gene3DG3DSA:4.10.1110.102.4E-91050IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.4621059IPR000058Zinc finger, AN1-type
SMARTSM001540.00291352IPR000058Zinc finger, AN1-type
PfamPF014282.5E-111350IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.107.7E-1091146IPR000058Zinc finger, AN1-type
SuperFamilySSF1183106.67E-993147No hitNo description
PROSITE profilePS510397.75798145IPR000058Zinc finger, AN1-type
SMARTSM001540.047101142IPR000058Zinc finger, AN1-type
PfamPF014283.7E-7101141IPR000058Zinc finger, AN1-type
SMARTSM003550.017209232IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.57E-5210262No hitNo description
PfamPF138947.3E-4210232No hitNo description
PROSITE patternPS000280211232IPR007087Zinc finger, C2H2
SMARTSM003557.2243266IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.203243271IPR007087Zinc finger, C2H2
PROSITE patternPS000280245266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGTPEFPNLG KHCFVDDCRQ IDFLPFTCDC CHQVFCLEHR SYNRHHCPTA NNNDVTVVVC  60
PLCAKGVHLI PDEDPNITWE SHVNTDCDPS NYEKATKKRK CPVPGCREFL TFSNTIRCRE  120
CTVDHCLKHR FGPDHKCPGR KKPEAAFSFM NFRTGSRNGE PNKAPATSSS SWASSFFKAA  180
EAGMAKLGSG RGQSSNATNH SGSANRQVEQ CPQCTLRFSS VTALVSHVQK VHEKNDVMNL  240
TVDVCPRCSK GFRDPVSLVE HVEREHKGTS KA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.163100.0flower| fruit| root
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g080200.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4421980.0Solanum lycopersicum stress-associated protein 12 (SAP12) gene, partial cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249266.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-119SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A3Q7ILC70.0A0A3Q7ILC7_SOLLC; Uncharacterized protein
STRINGSolyc10g080200.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Representative plantOGRP19091520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-117C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]