PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g078990.1.1
Common NameLOC104644361
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 233aa    MW: 26559.6 Da    PI: 7.7154
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g078990.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188.2e-0682104123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C++C +sF+++  L  H++ H
  Solyc10g078990.1.1  82 YECHYCFRSFPTSQALGGHQNAH 104
                         99******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.0E-680109No hitNo description
PfamPF139123.0E-682106IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.42782109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEKIEREALD FMNVESSSQL PITLPVNEKP IRLFGKEFGG GDSINMTATN MSEFIENNPF  60
YDKPNIVKEN HIKKNVEIMR KYECHYCFRS FPTSQALGGH QNAHKKERKN AKRHDQPSIY  120
GITNRNRLGE ATVSTRTHYH STWTNINNNT PRFDGNGHNV NVISPINGNP LTFWQIPPAF  180
NQYISSSSDN NNNLVFSNDD LIRNPPMVNI SNNCEYKPKG EVQDHVSLDL HL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g078990.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2442980.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-22l14 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010312073.11e-174zinc finger protein 8-like
TrEMBLK4D2E01e-172K4D2E0_SOLLC; Uncharacterized protein
STRINGSolyc10g078990.1.11e-173(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14731526
Representative plantOGRP285958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.11e-31zinc finger protein 8
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]