PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g078970.1.1
Common NameLOC104644359
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 206aa    MW: 23776.2 Da    PI: 8.6616
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g078970.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-0579101123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C +C +sF+++  L  H++ H
  Solyc10g078970.1.1  79 YECYYCFRSFPTSQALGGHQNAH 101
                         99******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.47E-677106No hitNo description
PfamPF139121.6E-579103IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2479106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEKIGREAVD YMNMKSFSQP LRKKSIRLFG KEFSVGDSTN MSESTDKNPL HHEPKPNTMS  60
ISANRIDKTG HVDEISRKYE CYYCFRSFPT SQALGGHQNA HKKERQNAKL SHLQSSIVHE  120
TNRNRFGEPS TAATRLTHYH STWSNINNNN VYSPNYNEAF WQIPPTIHHY QNNINPPSSF  180
SHDSFFPNDE EKREVQNHVS LDLHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g078970.1.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2445931e-145Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-44a10 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010312072.11e-154zinc finger protein 8-like
TrEMBLK4D2D81e-153K4D2D8_SOLLC; Uncharacterized protein
STRINGSolyc10g078970.1.11e-153(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14731526
Representative plantOGRP285958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.15e-20zinc finger protein 8
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]