PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g055550.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 305aa    MW: 33483 Da    PI: 7.7922
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g055550.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.35.8e-07129172750
                         HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                          +r  +N+eA r++ ++Kka+++ Lee+v  L   N++L ++l+
  Solyc10g055550.1.1 129 KKRSLSNKEAVRKYCEKKKARVASLEEEVVRLRDINQQLLNRLQ 172
                         5899***********************************98886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.002126190IPR004827Basic-leucine zipper domain
PfamPF077162.0E-8129172IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.3E-10129191No hitNo description
CDDcd146864.19E-8129182No hitNo description
SuperFamilySSF579593.94E-5130172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MLLLFLLFVY LTYSSLIDWI AKYHLNSSLL NACCLPAGSI STMDDMELEF SSQQVLSSST  60
FGEIPESSPM NKRFNEILTD VHACIHAHTC NPPGPDNSHT HTCYHVHTKV VTPPRDDTTA  120
ESTAANVGKK RSLSNKEAVR KYCEKKKARV ASLEEEVVRL RDINQQLLNR LQGQAVLEAE  180
VSRLKCLLVD IRGRIAGEIG SFPYHKPMEG ADVYQNLRGT YVMNPCNLQC DDQVYCLQPN  240
SEESNGQGLN SCGFETLQCS SSQGLKEVPG CALGFGTPTA NASRGNKKKR TGGKRAHNGK  300
PVNC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g055550.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2443090.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-25k20 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010327411.10.0basic leucine zipper 23-like
SwissprotQ8GTS22e-89BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A3Q7IIJ60.0A0A3Q7IIJ6_SOLLC; Uncharacterized protein
STRINGSolyc10g055550.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29892452
Representative plantOGRP19701536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.15e-90bZIP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  3. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  4. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]