PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g053890.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 167aa    MW: 19263.4 Da    PI: 6.7581
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g053890.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.66.9e-1627118199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkv+     + ++ l++p k a++ ++   ++ ++++ed+ gr+W  ++  +++ g+  +++GW +F  +++Lk+g+f+vF++++ ++ +
  Solyc10g053890.1.1  27 FFKVM--ILETFLQVLCFPPKIARSVSYL--TDLEISFEDSYGRRWMATV--CNYNGSLAIRQGWDKFSAEHDLKVGEFLVFHYVS-DDLN 110
                         55666..3334445689999999999877..4568***************..********************************98.6777 PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                         + v++f +
  Solyc10g053890.1.1 111 FIVQIFGT 118
                         79999976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.8E-1923121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.80125119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-1726121IPR015300DNA-binding pseudobarrel domain
CDDcd100179.87E-1426116No hitNo description
PfamPF023621.2E-1327117IPR003340B3 DNA binding domain
SMARTSM010191.3E-827119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MKLLEMMGAF YDNEDGLLIN GKKVISFFKV MILETFLQVL CFPPKIARSV SYLTDLEISF  60
EDSYGRRWMA TVCNYNGSLA IRQGWDKFSA EHDLKVGEFL VFHYVSDDLN FIVQIFGTSG  120
CEKIKFSCNI GKEKPKERTY QEITTTEECQ SGKLFVHKFF RVILFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g053890.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159850.12e-71PREDICTED: B3 domain-containing protein Os02g0598200-like
TrEMBLA0A3Q7IGZ01e-119A0A3Q7IGZ0_SOLLC; Uncharacterized protein
STRINGSolyc10g053890.1.11e-120(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Representative plantOGRP89721014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-08B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]