PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g050970.1.1
Common NameLOC101246484
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 224aa    MW: 25080.2 Da    PI: 8.9333
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g050970.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-2095144255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae+Aa+a+++a+ +++g
  Solyc10g050970.1.1  95 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFTTAEDAARAYDRAAIEFRG 144
                         59*******.**********82....48************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-3195152IPR001471AP2/ERF domain
PfamPF008471.6E-1395144IPR001471AP2/ERF domain
CDDcd000181.80E-2295151No hitNo description
SuperFamilySSF541712.88E-2295153IPR016177DNA-binding domain
SMARTSM003801.1E-3795158IPR001471AP2/ERF domain
PROSITE profilePS5103224.7595152IPR001471AP2/ERF domain
PRINTSPR003677.9E-1296107IPR001471AP2/ERF domain
PRINTSPR003677.9E-12118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MQRSTKLSGE EEFSIMVAAL TNVITGAATI SSFPCTSGMS PPLFRVPEET ERCQYCKING  60
CLGCNYFATS SAAAGVVNNN KALKIVGKTK KKKKNYRGVR QRPWGKWAAE IRDPRRAARV  120
WLGTFTTAED AARAYDRAAI EFRGPRAKLN FSFTDYTSIQ QHNTTTPMQV LQQQQPAPSQ  180
LQQGINTEEE EFWDQLMNSD NEIQHYLYRE SSDSANGYIA HSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2492151262ATERF1
3gcc_A4e-2492151262ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.84550.0callus| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g050970.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2448650.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-14f4 map 10, complete sequence
GenBankAC2457320.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-42i2 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248735.11e-169ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ069e-36EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A3Q7IGA11e-168A0A3Q7IGA1_SOLLC; Uncharacterized protein
STRINGSolyc10g050970.1.11e-169(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-35redox responsive transcription factor 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  3. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  4. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  5. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  6. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]