PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g049870.1.1
Common NameLOC101255146
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 173aa    MW: 19498 Da    PI: 10.5943
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g049870.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000764668123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ F ++  L  H++ H
  Solyc10g049870.1.1 46 FSCNFCKRKFYSSQALGGHQNAH 68
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.68E-74273No hitNo description
PROSITE profilePS5015710.994673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MRRAEDGYQG TSVLDQGEWL NLSLGRNLPS ISKESESHIP TSGKVFSCNF CKRKFYSSQA  60
LGGHQNAHKR ERGTVRQYQS QRMMTMMALP INNPMFRSLG MIPHSLLHKS SRDARATAAT  120
FSEASAGYQR TSLTNQMDRS FDLKWPGSFQ LNQQQTKDHT TNPTKLDLNL KL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g049870.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2449570.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-1i2 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071494.11e-128zinc finger protein 2-like
TrEMBLA0A3Q7IFY31e-126A0A3Q7IFY3_SOLLC; Uncharacterized protein
STRINGSolyc10g049870.1.11e-127(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32691313
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.18e-18zinc-finger protein 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]