PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g047640.1.1
Common NameLOC101055511
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 312aa    MW: 32827.1 Da    PI: 5.5851
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g047640.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43e-16225260134
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C++Cgt++  Tp++Rrgp g+++LCnaCGl ++ kg
  Solyc10g047640.1.1 225 CRHCGTSSksTPMMRRGPAGPRSLCNACGLTWANKG 260
                         ********************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.12789124IPR010399Tify domain
SMARTSM009792.6E-1089124IPR010399Tify domain
PfamPF062004.6E-1193123IPR010399Tify domain
PfamPF062033.3E-16156198IPR010402CCT domain
PROSITE profilePS5101713.245156198IPR010402CCT domain
SMARTSM004015.6E-9219272IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.906219267IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-12220275No hitNo description
Gene3DG3DSA:3.30.50.106.9E-15224266IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.24E-14225267No hitNo description
PfamPF003202.0E-14225260IPR000679Zinc finger, GATA-type
PROSITE patternPS003440225252IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MTAAVQREGQ QQTHFADDGD DDDVDVAGGG GGGGMESIED SSHHIGYDHN HHGLHNGTDG  60
TIATTAAALN GVEGVPHNSL YVPGSEMVGG GSSDQLTLSF RGEVFVYDAV SPEKVQAVLL  120
LLGGYEVPAG IPTVNMASQS HRASSEGPGR LNQPQRAASL SRFREKRKER CFDKKIRYTV  180
RKEVALRMQR KKGQFTSSKT VSDEAASSSA EGNAGSSQEE QETLCRHCGT SSKSTPMMRR  240
GPAGPRSLCN ACGLTWANKG ILRDLSKVST TGAQELSVKS SEQNGEADGS DVMAAAGIIT  300
SDDENMVLPS E*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.95470.0fruit| leaf| root| trichome
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g047640.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612270.0Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI008 mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001265920.10.0Hop-interacting protein THI008
SwissprotQ8H1G07e-80GAT28_ARATH; GATA transcription factor 28
TrEMBLG8Z2490.0G8Z249_SOLLC; Hop-interacting protein THI008
STRINGSolyc10g047640.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-77ZIM-like 1