PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g008780.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 583aa    MW: 66229.7 Da    PI: 8.2476
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g008780.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP65.22.4e-20102235166
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................... 65 
                         a+g+kdrhsk++T+ g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++a++ai +l +                           
  Solyc10g008780.1.1 102 ATGRKDRHSKVSTATGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAQRAINALEKApfqvfsnkinstnkalnvrnvenevg 192
                         589**************************************************************88888776665555555555555555 PP

                 TCP  66 ..........................................s 66 
                                                                   +
  Solyc10g008780.1.1 193 qfaleqswsadkkteleelarrssklnatvqystdqfpegcyK 235
                         5555544444444444444333333333333333222222221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.2E-19103235IPR005333Transcription factor, TCP
PROSITE profilePS5136927.683105163IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MKHHLEVSNE NEDKSSSSSQ QDDDDDENKD EFFQEILQSD YQHMQQWPNY FTPPSSTLVP  60
KKQNNTQCPS HKEETKKVSL KRKPKRAKQD VMEVHGSRIV RATGRKDRHS KVSTATGPKD  120
RRVRLSPNTA IQFYDVQDRL GYDRPSKAID WLIKEAQRAI NALEKAPFQV FSNKINSTNK  180
ALNVRNVENE VGQFALEQSW SADKKTELEE LARRSSKLNA TVQYSTDQFP EGCYKEQSSK  240
VCQANATQIV NSSANGSKIQ SFCQIQTHPQ AHLHSQTKRQ SPNDAKIQSF CEYQTHPQSH  300
FHSQTKKQSP NVAKTLSFCE MQTPSQGHFH SQTKNQPTND AKIQSFCQLQ THPQSHFQSE  360
TKNQSPNVAK IQSFGELQTT PQSHFHSQTQ KQSTNDAKIQ SFCELQTHPQ GHFHSETKNQ  420
SPNVAKVQSF CELQTHPQSH FQSETKKQSP NVAKIQSFCE LQTPPLSHFQ SETKNQSTQL  480
GNFFSFQSCH QNEPISFSGD HHHGFSFSPQ NFPTVLGQNQ MFNYQREPLQ STSNFPQTIS  540
YSNNIGFAND GLLGLSSAPI TQQQQQQDEQ GSISTTLLHY QD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-18110163154Putative transcription factor PCF6
5zkt_B6e-18110163154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g008780.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7ICJ60.0A0A3Q7ICJ6_SOLLC; Uncharacterized protein
STRINGSolyc10g008780.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1556966
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.14e-34TCP domain protein 10
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]