PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g091950.1.1
Common NameLOC101246474
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 420aa    MW: 46946.4 Da    PI: 8.5757
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g091950.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.7e-19248296355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  Solyc09g091950.1.1 248 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAFAYDTAAYMLRG 296
                         8******9.**********955...5**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.82E-30246306No hitNo description
PROSITE profilePS5103222.445247304IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-31247305IPR001471AP2/ERF domain
SMARTSM003801.3E-35247310IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-22247305IPR016177DNA-binding domain
PRINTSPR003671.5E-10248259IPR001471AP2/ERF domain
PfamPF008472.4E-12248296IPR001471AP2/ERF domain
PRINTSPR003671.5E-10270286IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MENQSLKSES IMQKELPTCY KQVAIESLSR FFKDPHIFSD LNHEITFINS SPTKFSEFLP  60
LNFHQNESSL SLSSSSSSLS TSSSYQHHQD QGNNNNIFPL NNFLDHQTCA SSTNSLSSNY  120
PTLGLFLQEP SILEISKRAA ESLSNKNHKS SSAALFPMSS SIGHESQIHY KEVATTNPTN  180
WLKMNQTITN CTTTKGFSDY WLSTTKTQPM KFKGSSRKSS LVHYEKSSSS SSSSSSSSSM  240
IASQGKLFRG VRQRHWGKWV AEIRLPRNRT RVWLGTFDTA EEAAFAYDTA AYMLRGDYAN  300
LNFPHLKNQL KANSINGNIT SLLEAKIRAI STQSKKKANN SSDRDEIIIS PKGLSDDDAT  360
IKNTIVQNQE KEINCEKLME ITKVKNINNQ ENVDGVQLSR MPSLDMDMIW DALLVSDLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21243314168ATERF1
3gcc_A2e-21243314168ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.164940.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g091950.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0442362e-12Lycopersicon esculentum ethylene-responsive factor 1 (ERF1) mRNA, complete cds
GenBankEU3956342e-12Solanum lycopersicum ethylene response factor (ERF1) gene, promoter region and complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247959.10.0ethylene-responsive transcription factor ERF062
TrEMBLK4CWM10.0K4CWM1_SOLLC; Uncharacterized protein
STRINGSolyc09g091950.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA109211825
Representative plantOGRP1128257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.16e-52ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]